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This study focuses on the process of updating and upgrading a large-scale legacy software system to ensure its compatibility with modern computing environments. The evolution and maintenance of legacy software pose significant challenges in software engineering, especially given the rapid advancements in technology, computing platforms, and dependent libraries. These challenges become even more pronounced when new systems are built upon existing open-source software, which may become outdated due to discontinued maintenance or lack of community support. In this work, we examine the problem from a sustainable computing perspective through the case study of the CyberWater project—an innovative cyberinfrastructure framework designed to support open data access and open model integration in water science and engineering. CyberWater is built on top of VisTrails, an open-source scientific workflow system. VisTrails has not been actively maintained since 2017, requiring an upgrade to ensure CyberWater’s continued functionality, compatibility, and long-term sustainability. This paper presents our work on upgrading VisTrails, including the complete upgrade process, tools developed and utilized, testing strategies, and the final outcomes. We also share key experiences and lessons learned, with a focus on the sustainability challenges and considerations that arise when maintaining and evolving large-scale open-source software systems in scientific computing environments. 

Workflow management systems (WMSs) are commonly used to organize/automate sequences of tasks as workflows to accelerate scientific discoveries. During complex workflow modeling, a local interactive workflow environment is desirable, as users usually rely on their rich, local environments for fast prototyping and refinements before they consider using more powerful computing resources. However, existing WMSs do not simultaneously support local interactive workflow environments and HPC resources. In this paper, we present an on-demand access mechanism to remote HPC resources from desktop/laptopbased workflow management software to compose, monitor and analyze scientific workflows in the CyberWater project. Cyber- Water is an open-data and open-modeling software framework for environmental and water communities. In this work, we extend the open-model, open-data design of CyberWater with on-demand HPC accessing capacity. In particular, we design and implement the LaunchAgent library, which can be integrated into the local desktop environment to allow on-demand usage of remote resources for hydrology-related workflows. LaunchAgent manages authentication to remote resources, prepares the computationally-intensive or data-intensive tasks as batch jobs, submits jobs to remote resources, and monitors the quality of services for the users. LaunchAgent interacts seamlessly with other existing components in CyberWater, which is now able to provide advantages of both feature-rich desktop software experience and increased computation power through on-demand HPC/Cloud usage. In our evaluations, we demonstrate how a hydrology workflow that consists of both local and remote tasks can be constructed and show that the added on-demand HPC/Cloud usage helps speeding up hydrology workflows while allowing intuitive workflow configurations and execution using a desktop graphical user interface. 

Abstract Bioresorbable electronic technologies form the basis for classes of biomedical devices that undergo complete physical and chemical dissolution after a predefined operational period, thereby eliminating the costs and risks associated with secondary surgical extraction. A continuing area of opportunity is in the development of strategies for power supply for these systems, where previous studies demonstrate some utility for biodegradable batteries, radio frequency harvesters, solar cells, and others. This paper introduces a type of bioresorbable system for wireless power transfer, in which a rotating magnet serves as the transmitter and a bioresorbable antenna as the remote receiver, with capabilities for operation at low frequencies (<200 Hz). Systematic experimental and numerical studies demonstrate several unique advantages of this system, most significantly the elimination of impedance matching and electromagnetic radiation exposure presented with the types of radio frequency energy harvesters explored previously. These results add to the portfolio of power supply options in bioresorbable electronic implants.